Frozen Embryo Transfer Timeline: What to Expect Step by Step

By CNY Fertility Updated on
Frozen Embryo Transfer Timeline: What to Expect Step by Step

Every frozen embryo transfer (FET) cycle follows a general timeline designed to prepare the uterine lining for successful implantation. Understanding this timeline can help you feel more confident and prepared as you move through the IVF process.

While the overall phases of a FET are similar, the exact timing can vary based on your protocol and how your lining develops. This guide outlines three common frozen embryo transfer timelines to help you understand what your process may look like:

  • Medicated FET timeline

  • Natural FET timeline

  • Modified natural FET timeline

With these key points in mind, let’s look at how a typical FET timeline unfolds.

FET Timeline at a Glance

Nearly all FET cycles follow the same basic process:

  1. Menstrual cycle begins

  2. Treatment cycle begins

  3. Lining preparation

  4. Timed embryo transfer

  5. Post-transfer support and pregnancy test

The exact timing depends on whether the cycle is medicated, natural, or modified natural and your individual needs.

Medicated FET Timeline

A medicated FET uses estrogen and progesterone to prepare the uterine lining and control timing precisely.

A medicated FET usually takes around 16 days and involves taking estrogen and progesterone at specific times during the cycle. Below is a timeline of a typical medicated FET.

Please note that “Day 1” refers to the first day of your treatment cycle—the day you begin estrogen. This usually occurs on menstrual cycle days 2–5, after your period begins.

DayMedicationsOffice VisitWhat’s Happening
Day 1EstrogenBaseline ultrasound & bloodworkTreatment cycle begins. A baseline scan and labs confirm it’s safe to start estrogen. Estrogen begins to prepare the uterine lining.
Day 2-9EstrogenEstrogen continues daily to thicken and stabilize the endometrium.
Day 10EstrogenMonitoring ultrasound & bloodworkLining check + hormone labs to confirm the endometrium is ready for progesterone start.
Day 11-15Estrogen + ProgesteroneProgesterone is started based on embryo stage (3 days before cleavage-stage transfer or 5 days before blastocyst transfer). Lining becomes receptive.
Day 16Estrogen + ProgesteroneEmbryo TransferEmbryo is thawed and transferred into the uterus during a quick, painless procedure.

After the transfer:

A pregnancy test is usually performed about 10–14 days later, and if pregnancy occurs, progesterone support typically continues until 8–12 weeks.

Natural FET Timeline

A natural FET relies on your body’s own menstrual cycle and hormones to develop a healthy uterine lining and monitoring to ensure proper timing.

“Day 1” in the chart below refers to the day of your baseline monitoring appointment—usually menstrual cycle days 2–4, after your period begins.

DayMedicationsOffice VisitWhat’s Happening
Day 1 (Baseline)NoneBaseline ultrasound & bloodworkConfirms uterus and ovaries are ready to begin monitoring. Natural cycle timing starts here (typically menstrual cycle days 2–4).
Days 2–9NoneYour cycle progresses naturally. No medications are taken.
Day 10NoneMonitoring ultrasound & bloodworkFollicle growth, lining thickness, and hormone levels are checked.
Days 11–14NoneAdditional monitoring as neededContinued monitoring to detect LH surge and confirm ovulation timing.
Ovulation DayNoneOvulation is identified via a urine test or bloodwork. Embryo transfer is scheduled.
Transfer DayNone or Progesterone (depending on clinic)Embryo TransferTransfer occurs 3 days after ovulation for cleavage-stage embryos or 5 days after ovulation for blastocysts.



A pregnancy test is usually performed 10–14 days after transfer.

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Modified Natural FET Timeline

A modified natural FET follows your body’s natural cycle but adds minimal medication—a trigger shot and often letrozole—to better control ovulation timing.

Below is a timeline of a typical modified natural-cycle FET. Please note that “Day 1” refers to the day of your baseline monitoring appointment (usually menstrual cycle days 2–4).

If letrozole is used in your protocol, it is typically taken on Days 1–5 of the treatment cycle.

DayMedicationsOffice VisitWhat’s Happening
Day 1 (Baseline)Letrozole may begin todayBaseline ultrasound & bloodworkConfirms the uterus and ovaries are ready for monitoring. Letrozole is started on Day 1 if used.
Days 2–5Letrozole (if prescribed)Letrozole supports follicle growth and helps prepare the uterine lining.
Days 6–9NoneFollicle continues to grow naturally after letrozole (if used). No estrogen is given in modified natural cycles.
Day 10NoneMonitoring ultrasound & bloodworkFollicle size, lining thickness, and hormone levels are checked. Additional monitoring is scheduled.
Days 11–14NoneAdditional monitoring as neededContinued imaging and bloodwork to track follicle maturity and hormone patterns.
Trigger DayTrigger shot (hCG, Lupron, or both)A trigger shot is given when the follicle reaches appropriate size, helping precisely time ovulation.
Transfer DayProgesterone (varies by clinic)Embryo TransferEmbryo is transferred 3–5 days after ovulation/trigger depending on embryo stage.

The Takeaway

All FET cycles follow a predictable structure and generally span 2–3 weeks. The details and exact timing vary by protocol and your unique lining development, but understanding these general timelines can help you feel more prepared and confident as you move through treatment.